Difference between revisions of "PHASTA"
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'''Parallel Hierarchic Adaptive Stabilized Transient Analysis (PHASTA)''' is a stabilized FEM fluid solver. It's code is publicly available on [https://github.com/PHASTA/phasta GitHub]. It is pronounced ''pasta'', as in the food. | '''Parallel Hierarchic Adaptive Stabilized Transient Analysis (PHASTA)''' is a stabilized FEM fluid solver. It's code is publicly available on [https://github.com/PHASTA/phasta GitHub]. It is pronounced ''pasta'', as in the food. | ||
| − | See the [[:Category:PHASTA|PHASTA Category]] for related wiki articles. | + | See the [[#Subpages|Subpages section]] and [[:Category:PHASTA|PHASTA Category]] for related wiki articles. |
== PHASTA Theory Papers and Theses == | == PHASTA Theory Papers and Theses == | ||
| Line 23: | Line 23: | ||
* A. E. Tejada‐Martínez and K. E. Jansen, '''“Spatial test filters for dynamic model large-eddy simulation with finite elements,”''' Communications in Numerical Methods in Engineering, vol. 19, no. 3, pp. 205–213, 2003, doi: [https://doi.org/10/b6qb2t 10/b6qb2t]. | * A. E. Tejada‐Martínez and K. E. Jansen, '''“Spatial test filters for dynamic model large-eddy simulation with finite elements,”''' Communications in Numerical Methods in Engineering, vol. 19, no. 3, pp. 205–213, 2003, doi: [https://doi.org/10/b6qb2t 10/b6qb2t]. | ||
* A. E. Tejada-Martı́nez and K. E. Jansen, '''“On the interaction between dynamic model dissipation and numerical dissipation due to streamline upwind/Petrov–Galerkin stabilization,”''' Computer Methods in Applied Mechanics and Engineering, vol. 194, no. 9, pp. 1225–1248, Mar. 2005, doi: [https://doi.org/10/cxrrc3 10/cxrrc3]. | * A. E. Tejada-Martı́nez and K. E. Jansen, '''“On the interaction between dynamic model dissipation and numerical dissipation due to streamline upwind/Petrov–Galerkin stabilization,”''' Computer Methods in Applied Mechanics and Engineering, vol. 194, no. 9, pp. 1225–1248, Mar. 2005, doi: [https://doi.org/10/cxrrc3 10/cxrrc3]. | ||
| − | * A. E. Tejada-Martınez, '''“Dynamic Subgrid-Scale Modeling for Large-Eddy Simulation of Turbulent Flows with a Stabilized Finite Element Method,”''' Ph.D. dissertation, Rensselaer Polytechnic Institute, Troy, NY, 2002. | + | * A. E. Tejada-Martınez, '''“Dynamic Subgrid-Scale Modeling for Large-Eddy Simulation of Turbulent Flows with a Stabilized Finite Element Method,”''' Ph.D. dissertation, Rensselaer Polytechnic Institute, Troy, NY, 2002. [https://www.scorec.rpi.edu/REPORTS/2002-6.pdf Link] |
== Misc Information == | == Misc Information == | ||
''<sup> When at all possible, please put relevant PHASTA information in a separate page or create your own page. This section is for '''general''' information that isn't large enough to put in a new page and doesn't belong as a new part of a different page.</sup>'' | ''<sup> When at all possible, please put relevant PHASTA information in a separate page or create your own page. This section is for '''general''' information that isn't large enough to put in a new page and doesn't belong as a new part of a different page.</sup>'' | ||
| − | + | ===PHASTA stdout=== | |
| + | ==== Iterations ==== | ||
stopjob,lstep,istep 6500 6498 898 1.938750000000030E-002 | stopjob,lstep,istep 6500 6498 898 1.938750000000030E-002 | ||
6499 9.515E+03 4.432E-07 ( 0) 2.818E-03 6.037E-04 < 16334- 7648| 22> [ 34 - 10] | 6499 9.515E+03 4.432E-07 ( 0) 2.818E-03 6.037E-04 < 16334- 7648| 22> [ 34 - 10] | ||
| Line 35: | Line 36: | ||
<code>step number</code>, <code>elapsed walltime</code>, <code>non-linear residual</code>, (<code>decible residual reduction</code>), <code>(delta u)/u</code>, <code>(delta p)/p</code>, < <code>maxNodeRes</code> - <code>part</code> | <code>ratio</code> > , [<code># of CG iterations</code> - <code># of GMRES iterations</code>] | <code>step number</code>, <code>elapsed walltime</code>, <code>non-linear residual</code>, (<code>decible residual reduction</code>), <code>(delta u)/u</code>, <code>(delta p)/p</code>, < <code>maxNodeRes</code> - <code>part</code> | <code>ratio</code> > , [<code># of CG iterations</code> - <code># of GMRES iterations</code>] | ||
| + | |||
| + | ==== Timings ==== | ||
| + | At the end of a PHASTA run, timers are normally displayed, showing how long the code spent in certain areas. They are all displayed in the same format: | ||
| + | |||
| + | Elm. form. : min [0,1833.77005], max[1008,1912.99410] and avg[.,1884.10127] (rms=9.61549) | ||
| + | Lin. alg. sol : min [1010,25904.35506], max[1001,25932.91754] and avg[.,25919.73341] (rms=3.81798) | ||
| + | ... | ||
| + | rblasphasta : min [164,1314.65255], max[114, 2143.41908 ] and avg[.,1870.08972] (rms=150.34270) | ||
| + | iblasphasta : min [0,9845403], max[0,9845403] and avg[.,9845403] (rms=0) | ||
| + | |||
| + | <code>key</code> : min [<code>min_part</code>,<code>min_time</code>], max [<code>max_part</code>,<code>max_time</code>], avg[.,<code>avg_time</code>] (rms=<code>rms_time</code>) | ||
| + | |||
| + | * The key shows what times are being displayed. | ||
| + | ** If it has a <code>r</code> prefixed to it (ie. "real" number), it is the actual time in seconds. | ||
| + | ** If it has an <code>i</code> prefixed to it (ie. integer), it is the number of times that routine/function/operation was done. | ||
| + | * The first number in brackets (<code>*_part</code>) shows the partition (ie. part) number where the min/max occurred (note for average there is no corresponding part). | ||
| + | * The second number in brackets (<code>*_time</code>) shows the min/max/average of timer | ||
| + | ** For <code>i</code>-prefixed keys, this is the number of calls to the routine/function/operation | ||
| + | ** For <code>r</code>-prefixed keys and all others, it is the time in seconds spent in the routine | ||
| + | ** Lastly, the <code>rms</code> is the ''standard deviation'' of the timer | ||
| + | * Note the timers are for the ''entire PHASTA run'', and the statistics (average and standard deviation) are per part. | ||
| + | |||
| + | == Subpages == | ||
| + | {{Special:PrefixIndex/PHASTA/}} | ||
[[Category:PHASTA]] | [[Category:PHASTA]] | ||
Latest revision as of 10:41, 18 September 2022
Parallel Hierarchic Adaptive Stabilized Transient Analysis (PHASTA) is a stabilized FEM fluid solver. It's code is publicly available on GitHub. It is pronounced pasta, as in the food.
See the Subpages section and PHASTA Category for related wiki articles.
Contents
PHASTA Theory Papers and Theses
Below is a list of the papers and thesis's published over time that deal with the theory of PHASTA and it's implementation.
FEM Implementation
Papers/Theses related to the implementation of FEM theory:
- K. E. Jansen, “A stabilized finite element method for computing turbulence,” Computer Methods in Applied Mechanics and Engineering, vol. 174, no. 3, pp. 299–317, May 1999, doi: 10/fk88ft.
- J. Zdenek, “Data Parallel Finite Element Techniques for Large-scale Computational Fluid Dynamics,” Ph.D. dissertation, Stanford University, 1992.
- C. H. Whiting and K. E. Jansen, “A stabilized finite element method for the incompressible Navier–Stokes equations using a hierarchical basis,” International Journal for Numerical Methods in Fluids, vol. 35, no. 1, pp. 93–116, 2001, doi: 10/bfrxzz.
- F. Shakib, “Finite Element Analysis of the Compressible Euler and Naviers-Stokes Equations,” Ph.D. dissertation, Stanford University, 1988.
- C. H. Whiting, “Stabilized Finite Element Methods for Fluid Dynamics using a Hierarchical Basis,” Ph.D. dissertation, Rennselear Polytechnic Institute, Troy, NY, 1999. Link
Misc Numerical Implementation
- K. E. Jansen, C. H. Whiting, and G. M. Hulbert, “A generalized-α method for integrating the filtered Navier–Stokes equations with a stabilized finite element method,” Computer Methods in Applied Mechanics and Engineering, vol. 190, no. 3–4, pp. 305–319, Oct. 2000, doi: 10/dd7jb2.
Fluid Model Implementation
Papers/Theses related to the implementation of specific fluid models
- A. E. Tejada‐Martínez and K. E. Jansen, “Spatial test filters for dynamic model large-eddy simulation with finite elements,” Communications in Numerical Methods in Engineering, vol. 19, no. 3, pp. 205–213, 2003, doi: 10/b6qb2t.
- A. E. Tejada-Martı́nez and K. E. Jansen, “On the interaction between dynamic model dissipation and numerical dissipation due to streamline upwind/Petrov–Galerkin stabilization,” Computer Methods in Applied Mechanics and Engineering, vol. 194, no. 9, pp. 1225–1248, Mar. 2005, doi: 10/cxrrc3.
- A. E. Tejada-Martınez, “Dynamic Subgrid-Scale Modeling for Large-Eddy Simulation of Turbulent Flows with a Stabilized Finite Element Method,” Ph.D. dissertation, Rensselaer Polytechnic Institute, Troy, NY, 2002. Link
Misc Information
When at all possible, please put relevant PHASTA information in a separate page or create your own page. This section is for general information that isn't large enough to put in a new page and doesn't belong as a new part of a different page.
PHASTA stdout
Iterations
stopjob,lstep,istep 6500 6498 898 1.938750000000030E-002
6499 9.515E+03 4.432E-07 ( 0) 2.818E-03 6.037E-04 < 16334- 7648| 22> [ 34 - 10]
6499 9.523E+03 1.485E-08 ( -14) 5.232E-05 5.121E-04 < 68- 7863| 30> [ 120 - 80]
CFL Flow Step CFLfl_max dt 6499 8.846E-01 2.500E-06
step number, elapsed walltime, non-linear residual, (decible residual reduction), (delta u)/u, (delta p)/p, < maxNodeRes - part | ratio > , [# of CG iterations - # of GMRES iterations]
Timings
At the end of a PHASTA run, timers are normally displayed, showing how long the code spent in certain areas. They are all displayed in the same format:
Elm. form. : min [0,1833.77005], max[1008,1912.99410] and avg[.,1884.10127] (rms=9.61549) Lin. alg. sol : min [1010,25904.35506], max[1001,25932.91754] and avg[.,25919.73341] (rms=3.81798) ... rblasphasta : min [164,1314.65255], max[114, 2143.41908 ] and avg[.,1870.08972] (rms=150.34270) iblasphasta : min [0,9845403], max[0,9845403] and avg[.,9845403] (rms=0)
key : min [min_part,min_time], max [max_part,max_time], avg[.,avg_time] (rms=rms_time)
- The key shows what times are being displayed.
- If it has a
rprefixed to it (ie. "real" number), it is the actual time in seconds. - If it has an
iprefixed to it (ie. integer), it is the number of times that routine/function/operation was done.
- If it has a
- The first number in brackets (
*_part) shows the partition (ie. part) number where the min/max occurred (note for average there is no corresponding part). - The second number in brackets (
*_time) shows the min/max/average of timer- For
i-prefixed keys, this is the number of calls to the routine/function/operation - For
r-prefixed keys and all others, it is the time in seconds spent in the routine - Lastly, the
rmsis the standard deviation of the timer
- For
- Note the timers are for the entire PHASTA run, and the statistics (average and standard deviation) are per part.
