Copyediting and cleanup of later sections of user manual; add links to manual from PetscLog and PetscView manual pagesCommit-type: documentation/spend 8h
Move most of the manual pages no Fortran support to Collective lineCommit-type: documentation/spend 48m
Remove unneeded " on xxx" from most Collective comments in manual pagesThe phrase was unneeded 99% of the timeI did not remove in the dm directory since another MR is still active that affects th
Remove unneeded " on xxx" from most Collective comments in manual pagesThe phrase was unneeded 99% of the timeI did not remove in the dm directory since another MR is still active that affects that directoryCommit-type: documentation/spend 20m
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source code format changes due to .clang-format changes
Remove parent, parentid, flops, time, mem, and memchildren. Deprecate PetscLogObjectParent(), PetscLogObjectMemory(), and PetscNewLog()
makefile: fix typo - petsckdir.mk -> petscdir.mk
Fix up all manual pages in src/sys directoryCommit-type: documentation/spend 10h
clang-format: convert PETSc sources to comply with clang-format
Change if () { PetscCall() } three liner and friends to one linersfor i in `git ls-files | grep "\.[ch]$"` ; do sed 's?\$?ZZZ?g' $i | tr '\n' '$' | sed 's?\([ ]*\)if (\([-;,.\*+=a-z0-9A-Z_>]*\)) {\
Change if () { PetscCall() } three liner and friends to one linersfor i in `git ls-files | grep "\.[ch]$"` ; do sed 's?\$?ZZZ?g' $i | tr '\n' '$' | sed 's?\([ ]*\)if (\([-;,.\*+=a-z0-9A-Z_>]*\)) {\$[ ]*PetscCall(\([- ._+=a-z0-9A-Z>*,()]*);\)\$[ ]*}\$?\1if (\2) PetscCall(\3$?g' | tr '$' '\n' | sed 's?ZZZ?$?g' > $i.joe ; mv $i.joe $i ; done for i in `git ls-files | grep "\.[hc]$"` ; do sed 's?\$?ZZZ?g' $i | tr '\n' '$' | sed 's?\([ }else]*\)if (\([-;,.\*+=a-z0-9A-Z_>]*\)) {\$[ ]*PetscCall(\([- ._+=a-z0-9A-Z>*,()]*);\)\$\([ ]*\)} \([- ._+=a-z0-9A-Z>*,()]*);\)\$?\1if (\2) PetscCall(\3$\4\5$?g' | tr '$' '\n' | sed 's?ZZZ?$?g' > $i.joe ; mv $i.joe $i ; doneYes, really ugly but Barry still cannot master awkCommit-type: housekeeping
Add -include */petscdir.mk to makefile that lacked itfor i in `git ls-files | grep makefile | xargs grep -L petscdir.mk`; do echo $i ; str=`echo $i |sed -e 's?[-a-zA-Z0-9]*/?../?g' -e 's?makef
Add -include */petscdir.mk to makefile that lacked itfor i in `git ls-files | grep makefile | xargs grep -L petscdir.mk`; do echo $i ; str=`echo $i |sed -e 's?[-a-zA-Z0-9]*/?../?g' -e 's?makefile?petsckdir.mk?g'` ; cp $i tmp echo "-include $str" > $i cat tmp >> $idoneCommit-type: makefile, housekeeping/spend 15m
remove garbage from makefilesIncluding * unused FLAGS variables * All: lib that did not work * stray blank lines etcCommit-type: housekeeping/spend 1h
Docs: bulk add backticks to .seealso man page fields```pythonimport osimport reimport fileinputdef _process_word(word): comma = "," if word.endswith(",") else "" return "`%s`%s" % (wor
Docs: bulk add backticks to .seealso man page fields```pythonimport osimport reimport fileinputdef _process_word(word): comma = "," if word.endswith(",") else "" return "`%s`%s" % (word.rstrip(","), comma)def _process_stripped_line(line): return " ".join(map(_process_word, line.split()))start_pattern = re.compile(r"^( *\.seealso:? )(.*$)")def process_file(filename_full): with fileinput.FileInput(filename_full, inplace=True) as f: in_block = False for line in f: line_stripped = line.strip() # end ".seealso blocks" on a blank line or C-style comment close line_modified = None if not line_stripped: in_block = False elif line_stripped.endswith("*/"): in_block = False else: match = re.match(start_pattern, line) # not stripped line if match: indent = " " * len(match.group(1)) in_block = True line_modified = match.group( 1) + _process_stripped_line( match.group(2).strip()) elif in_block: line_modified = indent + _process_stripped_line( line_stripped) if line_modified: print(line_modified) # prints to the file else: print(line, end="") # prints to the fileBASE_DIRS = ["src", "include"]EXT = [".c", ".cxx", ".cpp", ".cu", ".h", ".hpp", ".hxx"]EXCLUDE_DIRS = ["tests", "tutorials", "ftn-auto", "ftn-custom", "benchmarks"]def main(): """ Process everything """ for base in BASE_DIRS: for root, dirs, files in os.walk(base): for filename in files: if os.path.splitext(filename)[1] in EXT: filename_full = os.path.join(root, filename) print("FILE ---", filename_full) process_file(filename_full) for exclude_dir in EXCLUDE_DIRS: if exclude_dir in dirs: dirs.remove(exclude_dir)if __name__ == "__main__": main()```
Remove some PetscCheckFalse()
The great renaming:- CHKERRQ() -> PetscCall()- CHKERRV() -> PetscCallVoid()- CHKERRMPI() -> PetscCallMPI()- CHKERRABORT() -> PetscCallAbort()- CHKERRCONTINUE() -> PetscCallContinue()- CHKERRXX
The great renaming:- CHKERRQ() -> PetscCall()- CHKERRV() -> PetscCallVoid()- CHKERRMPI() -> PetscCallMPI()- CHKERRABORT() -> PetscCallAbort()- CHKERRCONTINUE() -> PetscCallContinue()- CHKERRXX() -> PetscCallThrow()- CHKERRCXX() -> PetscCallCXX()- CHKERRCUDA() -> PetscCallCUDA()- CHKERRCUBLAS() -> PetscCallCUBLAS()- CHKERRCUSPARSE() -> PetscCallCUSPARSE()- CHKERRCUSOLVER() -> PetscCallCUSOLVER()- CHKERRCUFFT() -> PetscCallCUFFT()- CHKERRCURAND() -> PetscCallCURAND()- CHKERRHIP() -> PetscCallHIP()- CHKERRHIPBLAS() -> PetscCallHIPBLAS()- CHKERRHIPSOLVER() -> PetscCallHIPSOLVER()- CHKERRQ_CEED() -> PetscCallCEED()- CHKERR_FORTRAN_VOID_FUNCTION() -> PetscCallFortranVoidFunction()- CHKERRMKL() -> PetscCallMKL()- CHKERRMMG() -> PetscCallMMG()- CHKERRMMG_NONSTANDARD() -> PetscCallMMG_NONSTANDARD()- CHKERRCGNS() -> PetscCallCGNS()- CHKERRPTSCOTCH() -> PetscCallPTSCOTCH()- CHKERRSTR() -> PetscCallSTR()- CHKERRTC() -> PetscCallTC()
pluck ~1000 low hanging PetscCheckFalse() -> PetscCheck() fruit
chkerr and friends wrapped
rename PetscAssert() -> PetscCheck() and PetscAssertDebug() -> PetscAssert()
add PetscAssert() and PetscAssertFalse()
Fix spelling errors in manpages and comments
Remove all double blank lines from sourceCommit-type: petsc-style/2h
Remove usage of PETSC_HAVE_FORTRAN_STDCALL, PETSC_BLASLAPACK_STDCALL, HAVE_FORTRAN_MIXED_STR_ARG flags - as Compaq f90 compiler is no longer supported
Fix more typos and add missing examples
Sys: Replace 0 -> NULL for pointers
Docs only, Fix spelling of thereforCommit-type: style-fixReported-by: Pierre Jolivet <Pierre.Jolivet@enseeiht.fr>
Add PetscArraycmp(), PetscArraycpy(), PetscArrayzero(), PetscArraymove(), update code to use new formsReplace a couple multi-mallocs with a single mallocReplace backwards loops in MatSetValues_*()
Add PetscArraycmp(), PetscArraycpy(), PetscArrayzero(), PetscArraymove(), update code to use new formsReplace a couple multi-mallocs with a single mallocReplace backwards loops in MatSetValues_*() with PetscArraymove()Commit-type: style-fix, feature
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