Fix spelling errors in manpages and comments
Remove all double blank lines from sourceCommit-type: petsc-style/2h
Linter using libClang that checks PetscValidHeaderSpecifcType, PetscValidHeaderSpecific, PetscValidHeader, PetscValid[XXX]Pointer, PetscValidType, PetscCheckSameComm, PetscValidLogicalCollectiveXXX f
Linter using libClang that checks PetscValidHeaderSpecifcType, PetscValidHeaderSpecific, PetscValidHeader, PetscValid[XXX]Pointer, PetscValidType, PetscCheckSameComm, PetscValidLogicalCollectiveXXX for validity. Automatically generates diff files for problems with a known solution.
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Merge remote-tracking branch 'origin/release'
petscviewer: fix the fortran bindings of XXXViewFromOptions when called with obj=PETSC_NULL_XXX
Convert MPI error type to PETSc error with string message for all MPI callsNow PETSc examples will ONLY return PETSc error codes and never MPI error codes directly so we can understand and post-pro
Convert MPI error type to PETSc error with string message for all MPI callsNow PETSc examples will ONLY return PETSc error codes and never MPI error codes directly so we can understand and post-process their errors better.The test harness will now automatically retry tests that fail with MPI, this may help with Intel MPI that produces seemingly random failures.Commit-type: error-checking/spend 30m
Vec: Replace 0 -> NULL for pointers
Updated the use of sizeof() when possible instead of using hardwired sizes for functions whose string argumentsneed sizes. In particular done for PetscOptionsGetString(), PetscOptionsString(), and a
Updated the use of sizeof() when possible instead of using hardwired sizes for functions whose string argumentsneed sizes. In particular done for PetscOptionsGetString(), PetscOptionsString(), and a few other utilitiesCommit-type: style-fixDevelopment Tools: Vim, Emacs, Eclipse
Added functionality to selectively filter PetscInfo() output based on calling class tomimic some OS system logs. New functionality includes:- Filter for a set of classes- Filter out a set of class
Added functionality to selectively filter PetscInfo() output based on calling class tomimic some OS system logs. New functionality includes:- Filter for a set of classes- Filter out a set of classes- Filter for MPI/PETSC_COMM_SELF- Filter for anything not on MPI/PETSC_COMM_SELF- Writing PetscInfo() output to new file- Appending output to existing PetscInfo() file- Any combination of the aboveCredit to Vaclav Hapla for raising the initial issue, helping design the eventual API, andsubstantially assisting in debugging.
Remove usage of PETSC_HAVE_FORTRAN_STDCALL, PETSC_BLASLAPACK_STDCALL, HAVE_FORTRAN_MIXED_STR_ARG flags - as Compaq f90 compiler is no longer supported
doc: fixes [and fix MatCoarsenViewFromOptions ftn interface that wasn't tested before]
Fix item list in manpages of XXXViewFromOptions
prototype for ViewFromOptions macro-->functions
Update the use of Collective on in the manual pages to reflect the new styleCommit-type: style-fix, documentationThanks-to: Patrick Sanan <patrick.sanan@gmail.com>
Man pages: remove .keywords: fieldsThis field is recognized by doctext from Sowing (http://wgropp.cs.illinois.edu/projects/software/sowing/doctext/node20.htm#Node20),but it doesn't seem to be unif
Man pages: remove .keywords: fieldsThis field is recognized by doctext from Sowing (http://wgropp.cs.illinois.edu/projects/software/sowing/doctext/node20.htm#Node20),but it doesn't seem to be uniformly used or maintained.Thus, remove all .keywords: fields, and a following blank line, if present.This is accomplished with GNU sed (gsed on OS X), with the following commands.*Warning* that this type of command can corrupt a .git directory,so be cautious in reusing or modifying these commands. They first lookfor and delete matching lines with a following line consisting of only whitespace,and then delete any remaining matching lines. find src/ -type f -exec gsed -i '/keywords:/ {N; /\n\s*$/d}' {} + find src/ -type f -exec gsed -i '/keywords:/d' {} + find include/ -type f -exec gsed -i '/keywords:/ {N; /\n\s*$/d}' {} + find include/ -type f -exec gsed -i '/keywords:/d' {} +Hints on the sed command obtained from: https://unix.stackexchange.com/questions/100754/how-to-delete-a-specific-line-and-the-following-blank-line-using-gnu-sed
Housekeeping: strip out __FUNC__ or __FUNCT__ from PETSc
Fixes for begining of users manual and a variety of webpages including manual pagesCommit-type: bug-fix, documentation
Remove memory leaks of XXXRegister() is called but XXX object is never usedThis means adding YYYInitialPackage() at the beginning of XXXRegister() routinesMinor fixes of missing prototypesCommi
Remove memory leaks of XXXRegister() is called but XXX object is never usedThis means adding YYYInitialPackage() at the beginning of XXXRegister() routinesMinor fixes of missing prototypesCommit-type: style-fixReported-by: Jed Brown <jed@jedbrown.org>Thanks-to: Fande Kong <fande.kong@inl.gov>
Log: various fixes and cleanups- Reorganize declarations in petsclog.h- Better -log_exclude, now applies to all registered stages- Minor fixes to implementation of -info_exclude- PCASM: Log appl
Log: various fixes and cleanups- Reorganize declarations in petsclog.h- Better -log_exclude, now applies to all registered stages- Minor fixes to implementation of -info_exclude- PCASM: Log apply-on-blocks KSP solves- Rename PetscLogDestroy() -> PetscLogFinalize() and hide it from the API
Consistent handling of command line options -info_exclude and -log_exclude
Remove handling of error code from PetscPClose() since some systems do not reliably return it.Commit-type: portability-fix
Remove the use and definition of __FUNCT__ throughout the codeSince all modern C/C++ compilers provide this functionality we no longer need to provide it manually in PETScTime: 1.5 hoursThanks-t
Remove the use and definition of __FUNCT__ throughout the codeSince all modern C/C++ compilers provide this functionality we no longer need to provide it manually in PETScTime: 1.5 hoursThanks-to: Andreas Mang <andreas@ices.utexas.edu>
Updated and simplified Fortran interfaceReduced from 4 distinct approaches to using PETSc from Fortran to 1No more .h90 files (Fortran 90 functionality is now always available)Parameters and func
Updated and simplified Fortran interfaceReduced from 4 distinct approaches to using PETSc from Fortran to 1No more .h90 files (Fortran 90 functionality is now always available)Parameters and function prototypes are now provide through Fortran modules, not includes;only #define are provided in the petscXXXdef.h filesPETSc objects can be declared as either type(tXXX) or XXX. For example type(tVec) or VecMoved now private Fortran include files out of public include directory since uses don't use them;they are only used to generate the Fortran modulesEasier to support and test; we can now easily add more function prototypesAlso had to rework generation of manual pages to consistently use MANSEC and SUBMANSECsince these variables also handle how the Fortran modules are generated.Time: 57 hours
Refactored ./configures handling of package requirements for precision. Now each package indicateswhat it supports withself.precisions = ['single','double','__float128']Updated the package files t
Refactored ./configures handling of package requirements for precision. Now each package indicateswhat it supports withself.precisions = ['single','double','__float128']Updated the package files to indicate what they supportRemoved unneeded #requires arguments from makefiles for external packages.Time: 2 hoursReported-by: Patrick Sanan <patrick.sanan@gmail.com>
replace uses of PetscMalloc() with PetscNew() or PetscMalloc1() where appropriate
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